From 499dc7446f4277bd2524df084ab9a9ec285c7ce5 Mon Sep 17 00:00:00 2001 From: Clara Moreno <clara.moreno.etu@univ-lille.fr> Date: Wed, 2 Apr 2025 10:45:40 +0200 Subject: [PATCH] =?UTF-8?q?Busco=20fonctionne,=20nous=20avons=20les=20fich?= =?UTF-8?q?iers=20de=20r=C3=A9sultat=20dans=20notre=20dossier=20cr=C3=A9?= =?UTF-8?q?=C3=A9=20=C3=A0=20cet=20effet.=20Maintenant=20que=20nous=20disp?= =?UTF-8?q?osons=20du=20short=5Fsummary.specific.bacteria=5Fodb10.busco=5F?= =?UTF-8?q?results=20nous=20pouvons=20en=20extraire=20les=20informations?= =?UTF-8?q?=20et=20modifier=20la=20fonction=20parse=5Fbusco.=20Youpi=20!?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- code dynamic | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/code dynamic b/code dynamic index 3748cd9..b64cbb5 100644 --- a/code dynamic +++ b/code dynamic @@ -122,7 +122,7 @@ def run_busco(fasta_file, output_dir, busco_db="bacteria_odb10"): os.makedirs(output_dir) # Commande BUSCO - busco_command = [ "busco", "-i", fasta_file, "-l", busco_db, "-o", output_dir, "-m", "genome"] + busco_command = [ "busco", "-i", fasta_file, "-l", busco_db, "-o", output_dir, "-m", "genome", "-f"] # Exécuter la commande BUSCO subprocess.run(busco_command, check=True) -- GitLab